Basic Information | |
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Taxon OID | 3300017997 Open in IMG/M |
Scaffold ID | Ga0184610_1000745 Open in IMG/M |
Source Dataset Name | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7415 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9195 | Long. (o) | -106.9496 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F064925 | Metagenome / Metatranscriptome | 128 | Y |
F089941 | Metagenome / Metatranscriptome | 108 | Y |
F093175 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0184610_10007452 | F064925 | GGAG | MMGEELARCHAGALLRAHPGRYYCARCLTRVLATAAWTKRDARRAIAVLFRWPIGLTTALRHRRDPCGDCGQVGGALLGAV |
Ga0184610_10007453 | F089941 | AGG | MVTYTTEDLVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS |
Ga0184610_10007456 | F093175 | GGAGG | MDGLRQIEVITQGDGWHLVGLDAEGRCWFGSPRRTTKGRMLTWILMDESVESEEPPPTITPEPLEEGLAGRPWPAAKPRP |
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