NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187865_1091775

Scaffold Ga0187865_1091775


Overview

Basic Information
Taxon OID3300018004 Open in IMG/M
Scaffold IDGa0187865_1091775 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F039911Metagenome / Metatranscriptome162Y
F101012Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0187865_10917751F101012N/ARESALRWINSHKVITLTATEVVNYSVHGVSSPLGVTFALGGTIVNVLMVAFVVPIWCRLSRLESRLS
Ga0187865_10917752F039911AGGAGMKYTIAAVLAVVAAVAGYFGIRRLTRKDLGFTPVKRYASKLAKTLLHTEATAAQEAGAAPTA
Ga0187865_10917754F005112AGGAGMSLAARYKLFWAACIATLCGLAFWKNSKSYPGKSRLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGVVFEAVAVLGVFIVDLLTGQVVARMDRRERNKLAKAA
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