NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187889_10032106

Scaffold Ga0187889_10032106


Overview

Basic Information
Taxon OID3300018023 Open in IMG/M
Scaffold IDGa0187889_10032106 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2973
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F016631Metagenome245Y
F101012Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0187889_100321061F016631GAGGMNRLANLALSVGETLLHEAGRLLFGIALGAAKQVLGTPQPLGTSQLAFPRAFRDKTVDGALLAGPRTQKEYAKFALKKGLPTEQRPRALAVENAPHSVDDFNGVIEEGYGKGEKRLVYSGTGVIKVGGSCQLGKINVHEHDAEKAGFHYDFVAEGVDPHTESFEVNIANGVLKGRYAFRQAFEENRYLVVRLKDNSVLVAKPDIHLKPPEFLNTIRQSDRPVSVEWKDDGSLANMAIHNLRAVYRSHRPEGKSYYDKLPAIEDLRNHSPVWLARKLFPGPEQEGTVLRGELHHADGAARVGGILNALPEKSIRIQQERGPVEFYAWDIAKFKGRDVSQIPYGQRRELYEGVIEEIRLFNRHLHVVPAMPEG
Ga0187889_100321062F005112AGGAGMSLAVRYKLFWAACIATLCGLALWKNSKSYPAKSKLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARVDRRNRKEVPRAA
Ga0187889_100321066F101012N/ATEVVNYSVHGISNPLGVTFALGGTIVNVLMVTFVVPIWYRLSRLESRL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.