NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184605_10258707

Scaffold Ga0184605_10258707


Overview

Basic Information
Taxon OID3300018027 Open in IMG/M
Scaffold IDGa0184605_10258707 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)791
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001404Metagenome / Metatranscriptome704Y
F032968Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0184605_102587071F001404GGAGMRKISLFAVAATVIATGFGVWAASPINARVSPSTGQGMQPFQLMVNAKGLPTEEFADYTFVFR
Ga0184605_102587072F032968AGGCGGMPSKDEITTAAPFHRRNHSMDPAMKAGIGAIACSVLFLAFVLLAIHTLPASIG

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