NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187869_10072752

Scaffold Ga0187869_10072752


Overview

Basic Information
Taxon OID3300018030 Open in IMG/M
Scaffold IDGa0187869_10072752 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1772
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049187Metagenome / Metatranscriptome147N
F063031Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0187869_100727521F049187N/AMKSNALRAQLAAVAAILFLALVAVAPWVAGSHVLKPVSVKWNQIIRRKDGLLVEEAGLEAKIKEFQNMEEKRKANELFQKNIDQSGLDSMQGLINNGKYPIYSFRTLQLDSKETSFSFVAQYNTLGQLLTDLWNTFQFIELSSLVVKPSPNKPEEDVVATLTVRLPQAQNR
Ga0187869_100727522F063031N/AMNPHHLKLPVIIDLQPAPENPILRLPDWMKYLFILLYICTLFGMGLLLKEGYGFFKLYQLKVQALRTAEQATRDIAALNQKLMENRRTQNSYEQFKYRQRAIARPGPLLNWLPTLVGRAQRAHFISLQQANDRVNVRVTLEKAIADSVIQNPAPPADYQIVQSGEETPKYQELPTNQRPSPKNEYAAFAAQLKKP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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