NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184615_10001377

Scaffold Ga0184615_10001377


Overview

Basic Information
Taxon OID3300018059 Open in IMG/M
Scaffold IDGa0184615_10001377 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13213
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009441Metagenome318Y
F070283Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0184615_100013775F070283GGAGGMPGRPSVGLADLEEVSRPITTGQFSNRPGCTLEVSTYVWNRNSFEAQHQFEDACRAHGIRFAVIERIGGIEWACP
Ga0184615_100013778F009441GAGMPHLFLAIALYLFVPGAAAAQREARQDDFLGLTRCEAGAAVTNLRPDVRDSMLVAEIEAHESVHREQAAAHQSCDAFLATLTSARHIIDAELPAYCAQWKVAVARGADSAITRRELAWRIAAQSGAMENRLQIARRFEEECR
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