NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0184637_10007261

Scaffold Ga0184637_10007261


Overview

Basic Information
Taxon OID3300018063 Open in IMG/M
Scaffold IDGa0184637_10007261 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6710
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019097Metagenome / Metatranscriptome231Y
F034330Metagenome / Metatranscriptome175Y
F035656Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0184637_100072615F035656GGAGVTHRLGRLWIRRTGVVYDVMFAPTGNGEFRIKTEDGLRAFLWGATIPAERIEEAVAALRNDTEHEIPNVALTLEQMSKLGL
Ga0184637_100072617F034330GGAGGMRVAETLTVLVAAIVLFMWAVFAHSTPDERARLHDSMGPSTGIAWR
Ga0184637_100072618F019097AGGMFCPVLGAAAGYLVDGVTGATSGFLIPMGPLIVMWLFGTR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.