NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181558_10493216

Scaffold Ga0181558_10493216


Overview

Basic Information
Taxon OID3300018417 Open in IMG/M
Scaffold IDGa0181558_10493216 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)638
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032084Metagenome181N
F046979Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0181558_104932161F046979AGGAGMKCFNCNANMKLEREKDISRYNNLFNLKLSFSCPKCGAVANAYPPKDDNQKVSHGG
Ga0181558_104932162F032084AGGAGMRLILSEKDKHIIVTVLGDYATEIDRQSTKSKEDLDTYKRIENIISQVAFGFDKEEKQE

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