NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10025817

Scaffold Ga0190265_10025817


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10025817 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4785
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064925Metagenome / Metatranscriptome128Y
F089941Metagenome / Metatranscriptome108Y
F093175Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_100258172F064925GGCGGMMGEELARCHAGAMLRDHPGHYYCAGCLARRLGPPAVWTKRDARRAIAVLFLGPIGLTATLRHGPDPCGDCGVIGGALLGSL
Ga0190265_100258173F089941GGCGGMTGVSYTTEDFVRRTVGRLLQGKYRGGAVCSGCLVGMTLEQLHTGWRRSEIEHAMEKVFNAPGALGSASDGPCARCRRPNPCIGGRPS
Ga0190265_100258175F093175GAGGMEGLRQIQVVTQGDGWHLVGLDAEGRVWFGSPRRTTKGRMLAWVLMDESVEIGEPLEPTALATHETLESPVAERHWPAKPRP
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