NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190272_10052110

Scaffold Ga0190272_10052110


Overview

Basic Information
Taxon OID3300018429 Open in IMG/M
Scaffold IDGa0190272_10052110 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2376
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.4668Long. (o)-109.6253Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034330Metagenome / Metatranscriptome175Y
F035656Metagenome / Metatranscriptome171Y
F098572Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0190272_100521102F098572N/AMVGEVTGFLHIVRVEAPVDPVNAEYRIAFAPLGGRLRSRHAVVHGLDRLTAFLRQAHVPTPDIERAWRALATRRVHSIPRVGLTPAQLEALGL
Ga0190272_100521104F034330GGCGGMRAVETLTLLLAATVLFMWAIFAHPTPDEQARVYDSMGQSTGVAWR
Ga0190272_100521106F035656N/AMFAPAGNGEFRLATAAGLRAFLWEATIPAERIDEALDALRTDTEHEINVVLTLDRMSKLG

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