Scaffold Ga0190272_10741570

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0190272_10741570

Scaffold Ga0190272_10741570

Overview

Basic Information
Taxon OID	3300018429 Open in IMG/M
Scaffold ID	Ga0190272_10741570 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	892
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. NDB2Meth4	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.4668	Long. (^o)	-109.6253	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052044	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190272_107415701	F052044	N/A	SIGQDLITTQLAMAMQTPSQALEGGWVLGYCFGIFDALAQQADLDDGGEGFGLLTAGFLGLFADPADPEAAMFVRRSLDGQDNPRFQEGAAAGGNDVFVWVADRAKAPNALFEHLTR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.