NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10345568

Scaffold Ga0066667_10345568


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10345568 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1180
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000528Metagenome / Metatranscriptome1047Y
F025365Metagenome / Metatranscriptome202Y
F077875Metagenome / Metatranscriptome117Y
F085194Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0066667_103455681F077875AGGTGGMRFLLGFLFGANCIGNRVFRVAFLVLVLFMVFCLYQMSKPL
Ga0066667_103455682F000528GGAGMGEWKAQISLRVRQDLRREMEEFAGKERRKLGNVGEVLLEWAWAQLQAAGSIDRLLKFKIRSKDRT
Ga0066667_103455684F025365GGAGGMPKKKKPKAASDGDTRLTPITPKERRKIDKSIKKKYDRLRRSYPEVHDKVVDFITHFIEDGTLYFSVRFKDKTDFSLRYACDMFVVGTDFCDFKTGDFEMIREYMRPILR
Ga0066667_103455685F085194N/AHEICQLMRVVERERKLEGNPPLVQFLPRNKRPKKTPRKTEGVHSSHRLNSLQPPASGIKSTVPEDAHA
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