Scaffold Ga0193067_1050334

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193067_1050334

Scaffold Ga0193067_1050334

Overview

Basic Information
Taxon OID	3300018659 Open in IMG/M
Scaffold ID	Ga0193067_1050334 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003102 (ERX1782249-ERR1712111)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	615
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Gulf of Mexico: TARA_142
Coordinates	Lat. (^o)	25.6168	Long. (^o)	-88.4532	Alt. (m)		Depth (m)	125
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011820	Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193067_10503341	F011820	N/A	VDPDAVFVPERLRDRIQWMPRTTSGVMLQNCQYVDYGFFGNLEVLSPKAFGVLVGSLDTCYTELDWKVGIKDGKYGPMGEDLFAEICMSKNGVHKVEAFDVTTDGACEAKRPTDQKKDKKWHSDCNVKTPAMHPYKKPKDYFECLDTTMAL

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