NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194239_10000036

Scaffold Ga0194239_10000036


Overview

Basic Information
Taxon OID3300018689 Open in IMG/M
Scaffold IDGa0194239_10000036 Open in IMG/M
Source Dataset NameEukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000852 (ERX1086441-ERR1007416)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGenoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1422
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042154Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0194239_100000361F042154N/AGAEMRGVFPVVFDYVVKYNIKDAMEHQGKAKMKFDGKTPAKKFEMSFAPKTGTPMDLIWNMDFSSGFKYDYDFKMNAVTMEKGNGEYKWVNNGQKFELMTKDTFIVTKQSPFHWMNTMVTGGREWTKMEHTRNIFFDKVNKAQMINKMKIEEHNILDGQTWYHIKYDNTAPKTAFLFTYLPYNMEHPWTYEGGREHTANGGFTLTHKITHGENVIQEAEWVFDVKANDGSKFEMEHLHKMTMTEESPFYGMVYWYTGRYGKNVERKMTVFFDKINKSILFVPKMKMDTTLAIDGEKISEFVFDNTQAKKHIKFFYSPDAYTKDYLYEEEWEYPGFSGIKCKIDFKRGGVSTYNYDGEYSWVNNANKFEVKSNEKANQEANGPYYGMDYWLVGTYWKSAVVTRTFTYEKKNRNFLLGKIHFESKVMADGERFYEAKLDTRATPYTMVWFHKPVRALYPTPRDLTGQDEMTVTAW
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