NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193595_1012659

Scaffold Ga0193595_1012659


Overview

Basic Information
Taxon OID3300018890 Open in IMG/M
Scaffold IDGa0193595_1012659 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3049
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F079676Metagenome / Metatranscriptome115Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0193595_10126593F079676GGAGMAIEALDPGGRISAGDNVRALDGKYKGKVGTALRVVKSSDEGRSSESVLVSFPAGGADYLDAGELERAEPDHAADA
Ga0193595_10126595F020517AGGLSGQRLVSRDVKHYLVKRPNEILSKRLSWNEVQDELRGKGTGADKAMLFRGVVTEDGTEYRDMYADSRTQVTEHAG
Ga0193595_10126596F091480GGAGGMRDLRVYIDPVAPGARGARKAFYSRRADGPYYLWFYAEGSGRWRYSRVNLDSHTLRVLCVAPWDAVPNALQDRLGEHYLD
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