NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193010_10038467

Scaffold Ga0193010_10038467


Overview

Basic Information
Taxon OID3300018949 Open in IMG/M
Scaffold IDGa0193010_10038467 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002172 (ERX1782262-ERR1712034)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Pacific Ocean: TARA_135
CoordinatesLat. (o)33.0339Long. (o)-121.8782Alt. (m)Depth (m)650
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098622Metatranscriptome103N
F102466Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0193010_100384671F102466N/AFFLARYIYLATTIISLYKRFLRIIGYLAGLLLLIIVSHNPDFNNRFDQFHNVICPFQKSNIVITTMKR
Ga0193010_100384672F098622N/AMGSRQETVRHSVSRSRDYTSDYKVARHYNLERNYPEDSFSARYDYYAGDKHGSDGLYPCNRDVLGTWKHYNLSSGTLAARNTRARSPLQSRELDRYFETRKRVNYIGDCSAGGAVDFRHYNYRRVPYFGGSDNYQYMKQKPTGWNGGRRL

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