NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179935_1278028

Scaffold Ga0179935_1278028


Overview

Basic Information
Taxon OID3300019231 Open in IMG/M
Scaffold IDGa0179935_1278028 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC057_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)844
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065813Metagenome / Metatranscriptome127N
F073596Metagenome / Metatranscriptome120N
F095525Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0179935_12780281F095525N/AMKHLTDIGLVALGLVVGIVIGQCLQYNKQRIDNFINKLKKK
Ga0179935_12780282F073596N/AMNVFEKIKLWFTSISKIVKFLTDTFGEAKILKDKQANFKDWVEFVIAFIKDALQYADEIAALAQSQPVQTKGQVIKAVKQDKVISTNFKTAYFKEKAKNFNK
Ga0179935_12780283F065813N/AMTPLISFFGWFDIIIATPFAIYLGYKIIKWIIGKLKKQPQEGEIETPDVES
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