NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180030_1062303

Scaffold Ga0180030_1062303


Overview

Basic Information
Taxon OID3300019239 Open in IMG/M
Scaffold IDGa0180030_1062303 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R2-A RNA time zero (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1412
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065813Metagenome / Metatranscriptome127N
F095525Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0180030_10623033F065813AGGAGGMTPLISFFGWFDIIIATPFAIYLGYKIIKWIIGKHKNKQPQEGEIETPDVES
Ga0180030_10623035F095525AGGMKELTDIGLVAFGLVVGVVLGQLLHYHQINLLETIKKIFKR

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