NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187892_10003359

Scaffold Ga0187892_10003359


Overview

Basic Information
Taxon OID3300019458 Open in IMG/M
Scaffold IDGa0187892_10003359 Open in IMG/M
Source Dataset NameBio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29460
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (87.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameUSA: the Island of Hawaii
CoordinatesLat. (o)19.0643Long. (o)-155.8008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019097Metagenome / Metatranscriptome231Y
F034330Metagenome / Metatranscriptome175Y
F035656Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0187892_1000335914F035656AGGAVHVRRHVVTHRVGRLWIRRTDVAYDVMFAPTGNGEFRIKTEDGLRAFLWGATIPAERIEEAVAALRNDTEHEIPNVALSLEQMSKLGL
Ga0187892_1000335915F034330GGAGGMRAAETLTVLLAAIVLFMWAILAHSTPDERARLHDSMGPSTGIAWR
Ga0187892_1000335916F019097N/AMAVDILRKAFMFCPVLSAAAGYLVDGATGAMSGLLIPMGPLIVMWLFATR
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