NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194029_1020771

Scaffold Ga0194029_1020771


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1020771 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012970Metagenome275N
F074816Metagenome119N
F097231Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10207711F097231GGAGGMLTLLLALNLLLDEGISPFPMTAVPQVVTPQPTPVADDPHPIGTVQREEFYILQSEAPLLVVASPPGLVEITHEQGPLMARGRFAGGNGKTETRMLLGNHLYFIDAVKSGTVELIVIPVGATEAEQIQRQLV
Ga0194029_10207712F012970GAGGMSEKTYNQQAAERVAERIPDGFGVDPMTVLVLLQTVIPAFLDCLNRNDDTDPDTVFERVKTLYDRNPERLLRRTARNCRAQARREGTRLSSPQAEDMARAIILEAIGTEPVFGAALAREVEDVD
Ga0194029_10207713F074816GGAGGVSTKQRDIVLSIIRHGLTLGAGALIASGKLDEAGANELVAALMAVIGIAWGINDKVKRVD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.