NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1004933

Scaffold Ga0181359_1004933


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1004933 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4289
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F028166Metagenome / Metatranscriptome192Y
F031101Metagenome183Y
F078716Metagenome / Metatranscriptome116N
F088905Metagenome / Metatranscriptome109Y
F091936Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100493313F031101GGGGGMNDLFWYSRQLREAVSTTGMENGWNDEKCKEVFDQLMDKYLVSKDLK
Ga0181359_10049332F028166AGGAGMTNGIDTTGFNETKAGDTNNLDLNPTGQAPAAAFPATDKSTQDGAGLGQNGK
Ga0181359_10049333F088905N/AMSEKDIDTTPVVEVKEEVKVEPKAEAKSAPVADSTDYWANAWANRGV
Ga0181359_10049334F001280GAGGMCIECGCESLGSETGIIPVTITDASRDGESGLTLAMTSTPEQTRQFINE
Ga0181359_10049335F078716N/AMSENGTGTPTAPISEPSGALTSREVPRKYPKQGSRPGIKIDRNKHGIRRETSLDPKPQKKGRPKKV
Ga0181359_10049337F091936AGGAMTEMTSVGDDFDRSMRLKRVIEEMLKDIDMSGEEWNDRDKDGVAYWEKWNKND
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Institute for Fundamental Biomedical Research
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