NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1114555

Scaffold Ga0181359_1114555


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1114555 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)972
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F036551Metagenome169Y
F094887Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_11145551F006618N/AKMKQHLEKQLNITRKTHEETGWKRYLCFEYEGNEYELTLFWDEFNGYEIYWREPNKTPAWVSEWDSEAHQDMSFEHYLDELTYEMEWK
Ga0181359_11145552F094887GGAGMEKELKEIDEALTNLWWGAEISDKAKLWWNDHYQEIIERELAK
Ga0181359_11145553F036551GAGMNETLEALLSNEIRICELCGSDEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILVSKKREEMR
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