Scaffold Ga0182240_100884

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182240_100884

Scaffold Ga0182240_100884

Overview

Basic Information
Taxon OID	3300020032 Open in IMG/M
Scaffold ID	Ga0182240_100884 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 4_PW_90
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6705
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Texas
Coordinates	Lat. (^o)	30.238	Long. (^o)	-102.628	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043707	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182240_1008846	F043707	AGG	MQSGEIIYVFEITEDMLLRIIKVSPEFEGDMYREGGIILEVLNVVTEDSDRVYEQVVEIPLTMEKASAISNILNYLAMECVNDLRQHANVLSMSIEAINKASESVDDEKRMYG

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