NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1481089

Scaffold Ga0211732_1481089


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1481089 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2716
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F021288Metagenome / Metatranscriptome219Y
F022197Metagenome / Metatranscriptome215Y
F080058Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_148108910F080058AGTAGGMNEYTVELIHEPSGAHMNFVMFSDLKEDEVQLSKEIWADMSVVVLDYIEGEE
Ga0211732_14810892F007691AGGALNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVG
Ga0211732_14810893F021288GAGGMLGYTQRDLADMTYGVGSADLLINADEHPAIHNYLVKTEEFLQGLWAEGYFD
Ga0211732_14810895F022197AGGAMTLETETMEDPKMYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMVDELSWDDAQWDIEENVFCPEYGTWEVR
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