NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10638784

Scaffold Ga0211736_10638784


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10638784 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)946
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F028166Metagenome / Metatranscriptome192Y
F078716Metagenome / Metatranscriptome116N
F088905Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_106387841F028166AGGAGMTNGIDLTGFNELQGGDSNNLDLNPTGQAPAAAFPAEDKSSQDGAGLGNGGK
Ga0211736_106387842F088905GGAGGMSDNKDIDTTPVVEVKAEVKVEPKAEAKSAPVADSTDYWANAWANRGV
Ga0211736_106387843F001280GAGGMCVECGCESVGSETGIISVNITDVSRDGESGLTLGMTSTPEQTRQFINE
Ga0211736_106387844F078716N/AMSENGTGTPTAPISEPSGAVTSREVPKKYPRQGSRPGIKIDQNKHGIRRETSLDPKPQKKGRPKKV
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