NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10760023

Scaffold Ga0211736_10760023


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10760023 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4949
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F028150Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1076002311F003582N/AMNIYKVKLEVDVEIEAFNEDDALDYSSDIFGVDDEIKNVKVISVKEK
Ga0211736_1076002315F028150AGGMKSLKKWGLAVLNENFTFLGFFVAWVVLEGSAKTVVGYVTIASVALWFLTIGIRERSEKE
Ga0211736_107600234F002060AGGMNHNSLIIAICAAILSGMGTAIIAGIRDSVKEKRRQVERDQDHLRLEVKDLKIELYKIDRELTEWKDKYYNAIQELILVKAELENTLSQLDHIEHHSESLDTEFLI
Ga0211736_107600237F000473AGGMFIDKSAEKQAEHFKYGINHWNGEPMKPVFYTKEMAQKVREIKKPVPDLLMDIVLYPDFLTIRLYEDNFIMYDGIKKEMVIDYVSKVKKLLESYGVRCELEGQPSRGIL
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