NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1002825

Scaffold Ga0206128_1002825


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1002825 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15163
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (96.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064878Metagenome / Metatranscriptome128N
F083265Metagenome / Metatranscriptome113N
F083266Metagenome / Metatranscriptome113N
F087772Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_100282511F083266AGGAGGMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCIASTMEYNDCLKGVC
Ga0206128_100282515F083265GGAVGDVIQFPPKTMLLHRQNCDDCNSVLEYWLGDDDCAYGICVGCLDLIPRKIEFNDNLLEE
Ga0206128_100282521F064878GGAMVLIPNESHHKKALEMATNKAFNGKTMLDNGSGQYAGNLAELMFKDVLDSQYIEHDYTAATSYHFDFKIGKATIDLKAKQRTVDCRANYDTHVNLYQKDYPCHYYIFASVLIPKGEKLASKVQFMGWCRKDDYWSTCEIKRKGQNSDGLIEREDGGKKKYHDLEPMGLFFGNIEKHLYQLAFGE
Ga0206128_10028257F087772GGAGGMKQLQITQRILDCEEHGWYDLLAKVDGITQNILECPSATFQIKAALILWADSVDLRSSSLPPDEESVILHNPSMNHKETFGAEA
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