NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211505_1035536

Scaffold Ga0211505_1035536


Overview

Basic Information
Taxon OID3300020352 Open in IMG/M
Scaffold IDGa0211505_1035536 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044514Metagenome / Metatranscriptome154N
F085685Metagenome / Metatranscriptome111N
F105168Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0211505_10355361F105168GGAGMLKQIFTDKMSDYKVVDIILKIWVAGLLSMVVLGLVGVISHIIMNPSSIDNATFGVFDTLGN
Ga0211505_10355362F044514N/AMSSFKKWWKVNGQGIGFIAGIVFLNAYFLMLGDLMNEHEWLAGVWLLCFFGFAGWYAWQMRVHGWKLPKNIKDTH
Ga0211505_10355363F085685N/AMSDKKEGFFAQIKNQIIAGVGIILTTLGGIFIDEVKSFIGIEDDSEPQTEIVQENNQSVNVEGPTIVVNIPEQQVKEKVIIKEVKVPVKKKKEKEQEIDW
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