NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211638_10393669

Scaffold Ga0211638_10393669


Overview

Basic Information
Taxon OID3300020448 Open in IMG/M
Scaffold IDGa0211638_10393669 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.24Long. (o)-129.4851Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013703Metagenome / Metatranscriptome269Y
F030559Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0211638_103936691F030559AGGAGMKKLWSIILLIGLVNAQMPEPTMVGQDKLQVPTLSINNFVNQAEIEGLEDSRVFLGISNILEENVMDSRYELVESDSDFEMTARVVYLGRPRTSTTFLGLFRRESSTTEV
Ga0211638_103936692F013703N/ARENFLNLNMMYGYRLPIPIRDNTIFLQTFVSYTLFRYFEGLKTENKYLLLESPILIYPGASIDINFTETFKMNFGFYVGYNTLVNDIGERNISYSIVFGTNF
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