NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10000885

Scaffold Ga0211625_10000885


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10000885 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33990
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (66.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019329Metagenome230Y
F020626Metagenome223Y
F020711Metagenome / Metatranscriptome222N
F033214Metagenome178Y
F057429Metagenome136Y
F072847Metagenome121N
F077385Metagenome117Y
F099423Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0211625_1000088510F019329AGGAMAEIGQFIFCNVSPIVVYLLKSFFYFVTGDQTGATVTQLTIKLYKSMTYYVSPMCHYSRRRKALFCFLEIKMSKYSTILRGFAW
Ga0211625_1000088515F020626N/AMNEPIIKEVNVHDELKRARNAFYDAMFEGNEEEMCAANNAVGYYESMDGVSCPEYPGF
Ga0211625_1000088518F033214GGAMTIKVWLLYLLISMPGMPSVKNNSFLYPNEEECMQALVDYLNIYESKSAEYKAGLKTTGYCLPFDAFPIQGMNIL
Ga0211625_1000088526F077385N/AMSSKHVWQWYWAYDWLNQKYKAIYFGPRLSWMKLFKKRKSDKKKVRKIRASSK
Ga0211625_1000088528F099423N/AMLFKCQIKMTEDFYDHMKKEQDILDASYRESLRQKHERMAVWDPGEEKAVFWEIKTFIIARYRALREWAVCLYPGKRLK
Ga0211625_1000088530F057429N/AMKNLRMNARVFVEYDKSSVRPGPKFKCSICGKWFKKLLYWLDKKFNPDQEYKMIFLCGPKCATENHDRNNS
Ga0211625_100008854F072847AGGAMTKSDFKTRVGMGFFSCKWINNKGEVSVIKRAILGQYAWRHTNLATRNSIREHNNYVLAYRVGNGLDANHRRWANINTNNILEINGNRV
Ga0211625_100008855F020711AGGAMTENLPKVITSNGSDITPLLKEMIDHLKLEKELGNVDKLADVKVPMSSSADWKLICGVLCNSIVEWAGQNRNNGGLDLIHHMQSDIGYLVKRLGLVE
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