Basic Information | |
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Taxon OID | 3300020488 Open in IMG/M |
Scaffold ID | Ga0208051_100873 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3884 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (53.85%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000744 | Metagenome / Metatranscriptome | 909 | Y |
F004898 | Metagenome / Metatranscriptome | 419 | Y |
F013172 | Metagenome / Metatranscriptome | 273 | Y |
F032934 | Metagenome / Metatranscriptome | 178 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208051_10087312 | F000744 | GGA | MTEATVQLNVHEIGVILSALQNLENADENRIAREYGSAPALYNKLYSYWEQMDRSETGLRNDVVPSF |
Ga0208051_1008733 | F004898 | GAGG | MDLSELIDELREIAMYESDPQDWMGYLGDDEPWVPDSELAY |
Ga0208051_1008738 | F032934 | N/A | MMDKPILIKQFANRWYLHWADNGRTIASFPSEFEAYAARRSMIEYNKKGEI |
Ga0208051_1008739 | F013172 | AGGAG | MTYWTTKLNTATNRRLEKLESEGVKIDTATHQGRQVIGYNYLEVVGEDDETE |
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