NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208484_1000672

Scaffold Ga0208484_1000672


Overview

Basic Information
Taxon OID3300020504 Open in IMG/M
Scaffold IDGa0208484_1000672 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7641
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066480Metagenome / Metatranscriptome126N
F067430Metagenome / Metatranscriptome125N
F076862Metagenome / Metatranscriptome117N
F086589Metagenome / Metatranscriptome110N
F100357Metagenome / Metatranscriptome102N
F102512Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208484_100067211F100357N/AMDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVIP
Ga0208484_100067213F086589N/AMEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQNGDGDEIFLSANTDTRHSLNE
Ga0208484_10006724F102512N/AMSVRKLIDEALVTYIRREMCDNIVMLCMEMKTFAEILEKFPVERLQLLRTEVIKVHNQVFGMMEEVKESFLQLV
Ga0208484_10006725F067430GAGGMSTSSTDQTEDNKEKLVESIEAIFGLLTLLDNYCKILIDKGKPDPSKGSIETAKESIVEMAKRVKEVLEIENTKINLTNGKT
Ga0208484_10006727F076862N/AMSNPSHDSTVEEITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMAKNLLESNSPRTHTIARQYGRKYPPLTGPLARMLMDLVDLEDLVSCKEIEEMKEVIEDLDNW
Ga0208484_10006728F066480N/AMEIFKERENQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQINVFSKEEKVLQELLKYILERMITCLDTESKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
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