NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1000553

Scaffold Ga0208091_1000553


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1000553 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6691
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F003582Metagenome / Metatranscriptome478Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y
F028150Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_100055310F003582N/AMNTYRVKIEVDAEVQAFSENDAVDYVNDIFGVDDEVKSVKLVSVKEK
Ga0208091_100055314F028150AGGGGGMNWLKKRLMAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVALWFLTIGIREKAEKEEE
Ga0208091_10005534F000671GAGGMEKILCYSCAKSKNKLEAKRSSLLPINLLICDTCITSKFEPRWVIILAGRSNGPDHVKEFILKRRYVGPEVSASELLI
Ga0208091_10005535F011938AGGVKEYYDVVHIVYIHSDKCYGAVEKLGAYASMVRYKKNDEEIEELMENEDFTIMEEIIFKHVEEQE
Ga0208091_10005536F000473GAGGMFIDKSSAKQNEHFKYGINQWTGEPNKPVFYTLEMKKRVHEIQKPPTFMMDVVKYPEFLALRLYEDNFLQFQGSKKEMVIDYVNKVKTLIESYGVRCELEGVPSERVL
Ga0208091_10005538F013878AGGMLNLTELGVEVFIKKAKNIVPYWDNYDLVIWKKDASGFTNVKGMFKNNNWGTAEKIAVDNKGIWKLPTKYVKHFK
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