NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1009676

Scaffold Ga0208223_1009676


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1009676 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1561
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F061853Metagenome / Metatranscriptome131Y
F105175Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208223_10096761F105175AGGAGMADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQASAQGPK
Ga0208223_10096762F001280AGGMCVECGCEAFGSETGINNIPGGMLNVARDGEAGLTLNMTATPEQRERFINE
Ga0208223_10096763F001176GAGMNNGTGMDTPPNNTPSGAVTSQEATRKNPSQGKFRSGVSGPRPATKIDTNKHGIRRETILGQKKTKPKKV
Ga0208223_10096766F061853AGGAGMNKKTITLIGLGLSLAAIAYVTYNSLSQLKDIDYDMFDEESEDEDF
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