NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10000281

Scaffold Ga0210399_10000281


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10000281 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41495
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041937Metagenome159Y
F078492Metagenome116Y
F087507Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_1000028122F078492AGGAGMRSSGSLVSSTYERPNVKGKKATAEKITSWSIRADVVHKLDRGEPEPEAAPATEAAAPSDAPF
Ga0210399_1000028134F087507GAGMIANALLITIAFLLAYGFWLMGELKFMASYKGVLLHAYGGWILGSAAVLFFNLFGAVLLLERKFLLKNTGRKLSHLDRQFQVGQIEMPAPGQEEEQS
Ga0210399_1000028137F041937AGGAGGMSIIKKAPAILVREFRLEEPVSVLLDDYAQSIESSADHVVNAAIKKTLWRDQDYREWREQKRSADSAAARRGPAPTAKS
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