NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_11277579

Scaffold Ga0210401_11277579


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_11277579 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)592
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023166Metagenome / Metatranscriptome211Y
F101702Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_112775791F101702N/AKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKEGKA
Ga0210401_112775792F023166AGGAGGVEYNVGSRVRVRLYSGKVVEAEITAITNQSTGRKLQIVYGNVTASINPAQITEVLPAT

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