NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000117

Scaffold Ga0210404_10000117


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000117 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53863
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (82.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000063Metagenome / Metatranscriptome2803Y
F000217Metagenome / Metatranscriptome1557Y
F009833Metagenome / Metatranscriptome312Y
F035434Metagenome / Metatranscriptome172Y
F040835Metagenome / Metatranscriptome161Y
F069092Metagenome / Metatranscriptome124Y
F094341Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000011738F000063N/AMLAEGVWAEVKVGAEHLRLFSEHNAIGVQASVYIEQGKDKAAAYAEVHLKRAGNLELPPLEWKRSRSA
Ga0210404_1000011742F040835AGGVRSDPLAMRMEPIFTAAERAEEYLERIAALTGAEQDDDGTYHLTAGRIRFRVDYKFVGVISHGGGSTCFSVVAYPDLPRAEVIASALLQLKNNPRLFEKWRHRHGDTFKANGQMFGDTYRLTRGGT
Ga0210404_1000011743F035434GGGGGVLLGYLMLPPALSLIPFFALTLCRFVFAGMGWRWLVGEIDAPRRPQNGLLEHGLHILDPAGLTSVAGELENRVGGADPIDRKYRAQSYLRRIVALTGATQIGSGYALDVGTTRFQVRDRYVRRVRDITDPKCTHEQTCFYPAHKEMPKAEQIATALLQLANNPALFDRWAVQNGVAFKADGQVFTSAQ
Ga0210404_1000011744F000217AGGAGMTAKIQTFSSHGDRTLLEYDPAAADMDEVNRVISEYEAKTGAQPFDMATGERIEKITSEQREVLMVHPIAGG
Ga0210404_1000011748F009833GGAGGMHSPFEILKKEPAGSFRRFEPVSDLASANIRIRELTTLSPGEYVVFDHRTHHDIAVGRLSFWVDHRRE
Ga0210404_1000011749F069092AGGAGMASPRPAMTNEQKILAALARIESKLDDTERRVKAVQQDLNRVKRIVRG
Ga0210404_100001176F094341AGGAGMTFDELWRLNLDRDGAAGDSVDKAETVGLLAVLGENPNEQLLTADDCVCFC
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