Basic Information | |
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Taxon OID | 3300021171 Open in IMG/M |
Scaffold ID | Ga0210405_10006998 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9964 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001546 | Metagenome / Metatranscriptome | 673 | Y |
F062104 | Metagenome | 131 | Y |
F083090 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210405_1000699811 | F083090 | GAGG | MPDWKQIVRRNLPILTVYSPEFTEELAAHLEDSYEAALGQGSSAEAAFQQTIGQIEGRCGVWLVMRFLQEELMAGFIRGVALPGLLTSAAACFFYRVLELDHIQHKVIWLLGGQLPLWWWCLLPICGALGALLSRRNGGSRLQRIAASLLPSWVKGTFILLMFVVGFTLSGLVNDYQLVSTRLESLGLVPPGFVIIPAAFSLLGAGIAEVSTKKFRRLA |
Ga0210405_1000699816 | F062104 | AGGAGG | MVAQVWLNTNLVRLQKAVLCANCELISEGPNAHCAGCGSQSLLILSTILGGTIEPELSFGFEASVPAVCDDEHVSVSAAA |
Ga0210405_100069983 | F001546 | N/A | LRDKTGRLGNRLLTDANRWDENAGLRRDAIGSQVIDALEAQEIKETGNEED |
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