NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10052649

Scaffold Ga0210408_10052649


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10052649 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3183
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014323Metagenome / Metatranscriptome264Y
F031154Metagenome / Metatranscriptome183Y
F089173Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100526492F089173GGTGGMTTIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELTARGMRREDLPHIALTGRV
Ga0210408_100526494F014323GGAGMSTKRNTVPQLQLELLMAGVKSPGGRLRFAKCSAETLAATYAALLSLQRKKLIEPEKQADPAIMSWKVTKAGKAVLAEKPGRR
Ga0210408_100526495F031154GGAMSECPKDTDAAGRCAFCGKQLPVVNGEPQPWRAPNGQFFCNEFCADDAEEVRFRRHGRAEPKAHERDFFF
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