NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000058

Scaffold Ga0210396_10000058


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000058 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)222274
Total Scaffold Genes210 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)168 (80.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004942Metagenome / Metatranscriptome418Y
F007603Metagenome / Metatranscriptome348Y
F012272Metagenome / Metatranscriptome282Y
F020987Metagenome / Metatranscriptome221Y
F047772Metagenome / Metatranscriptome149Y
F059481Metagenome / Metatranscriptome134Y
F099783Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_10000058157F047772GGAGGMNESKSIGRCRVLASMAMLSGAMFTILLLPAYGQQDVSPDWYDPAPNATVVHSVQPAAAVHSSQLPAAAHRYQQTVTSVSTAPDAGKLGAKHAQIQSGNNPGRKSGGSPSGELVAIASRDPR
Ga0210396_10000058160F099783GGAGGVRNRYQRSYICIAFVLASALSVLAQSDRMDIQRPDDLQRKVSDDGEPQLAAMLAQPPPVAGVSGDSNLPDAPSATKPDASTADPSSPAASPAIKRESHGAPVAAQGGPLWVDRTVADRSYLALTGGMFGASVANAELTIYCLGRHPSCNDVPPSLKSRAAIYGIGIPADLGVAYLTYCLKRKHNHIWYVPAAAVTGANIFFAYHAYHWGHERSIP
Ga0210396_1000005817F007603GGAGMNYSTQKWWGVAILALLCFAPCAFANSNLTMTGAGNNVMAGVYVGPYTATVNGVANTPVICDDFADDSVIGHSWNFTANNFSTLGSALWGNQTKTYEAAAWLTLQMLSLNSNSSNATQVGYLSFAIWSLFDQNALSHLNSTQLAGVDGWLIKVPGNLTPGQFANFVLLTPQGCTNGPGSCPGQEFFEVMPEGGSAAMYLLFAGLSCFAAMLFRRRQATAMRSSIG
Ga0210396_1000005824F020987GGAMTNNSDYSFAIIRFNEKTYMSGGVVAVVKGTESAQKTLNDFEWCQSQEDRGSGWRYFLEETDLQPGIDPAKATRLRQLRLDLQESQAKSL
Ga0210396_1000005828F004942GGTGGMSDKVFGLSVNQVMAYAAIANVTLVLVLTTINIYYAWLAKRQADASSAQVDSSNRQREIAAETLSILRKQIEQQRTADLATVGLQLKVAIHTIEDWLKRIGSVAFPQLPDEIRILPTDFGIATQRANAIDPIVAENMGAAALYAGEAETNIRILRSGNPAKPESWKEMQDKATNNLNIAKYKLNVARTRWESTNA
Ga0210396_100000583F059481GGAGGMATGAVTAREPKVDVKAETTQSSEAQPLTVKQRFIHLLHEIFKGHEEHLGWRQ
Ga0210396_1000005834F012272N/AMKKDTRLTFRVNSHVKRDVEAIAAREGQSVARICEAFLLAGSDAYKKQGSKFLERMLGRVGTKPAD
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