NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_11733590

Scaffold Ga0210396_11733590


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_11733590 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)507
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000277Metagenome / Metatranscriptome1389Y
F028290Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_117335901F028290N/AMPLPFMLYAVAVVLLDTLSFASLAYVANRKGHHALAALAAAGAWLFGAASVLIWFWR
Ga0210396_117335902F000277GGCGGMARDVSARSKTVRRAIANLLAQAINSDDADRAARIIQEALGIERDDVANYCFPKTWPADREQRARIIGEWLRTEARYLA

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