NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210347_1125558

Scaffold Ga0210347_1125558


Overview

Basic Information
Taxon OID3300021331 Open in IMG/M
Scaffold IDGa0210347_1125558 Open in IMG/M
Source Dataset NameMetatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.456 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2135
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.286Long. (o)-124.052Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000331Metagenome / Metatranscriptome1285Y

Sequences

Protein IDFamilyRBSSequence
Ga0210347_11255582F000331GAGLHFEHLCDSYGIKRKPTTVRNPQANAILERVHQVIGQMLRTAEIDMAKSVVPDDVDVFIDNAAWAIRSTYHTVLKASPGAAIFGRDMLFDIPFLADWNKIGDYRQSQTDRSAERENSKRIDYDYKLGDKVLIVKDGILRKAESRYGKEPWTITTVHTNGTIRVQCGSKSERINIRRVTPFSEDNI
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