NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213858_10015546

Scaffold Ga0213858_10015546


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10015546 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3607
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014373Metagenome / Metatranscriptome263N
F016661Metagenome245Y
F065668Metagenome127N
F097118Metagenome104N
F105152Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1001554612F105152GGAGMSREYCRVDDCPSYDYSDYEDSTGYYTPHDDREVDYDPIEQPEMYKRLKEVKTRLGVKQD
Ga0213858_1001554614F014373AGGAGMSRCKACDVILTEAELRKRDRVTDEFIDLCSDCHTASDEAIEENWSIAEERDIIRSNN
Ga0213858_100155464F097118AGGMIKFPSGLKFGKGEDSLVDSLFAGDSTNDGWYTVTGRKYKTMRFFTGNGKPLFYIVSNKHGITSGSLTTSGEKFYYMAGTCSLTSKKLGLDKLDYTTEKTLITDIIEVA
Ga0213858_100155466F016661GAGGMNYSAERYLALKQFEREQKRDKIRAVLFNLTIGGYVVLLAVQVIRGL
Ga0213858_100155468F065668AGGAGMLYTVWVGGVEVNSHLTNREEAHRIASNWRNDGYSDVIVERYKPYEYHS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.