NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10016560

Scaffold Ga0213858_10016560


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10016560 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3496
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014373Metagenome / Metatranscriptome263N
F016661Metagenome245Y
F079927Metagenome115N
F105152Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1001656010F079927GAGGMSKDYREQAQLEDIADTTYNMYQYFKELTDYERGEYDALHGYPVSDAEESPDYLSGYGDAYAYLQTLSGDIINE
Ga0213858_1001656011F105152AGGAGMSREYCRVDDCPSYDYSDYEDSTGYYTPYDSREVDYDPIEQPEMHKRLKEVKNRLGVK
Ga0213858_1001656014F014373AGGAGMSRCKACDVILTEAELRKRDRVTDEYLDLCSVCHSASDEAIEENWSTAEERDIIRSNN
Ga0213858_100165605F016661AGGMNYNAERYLALKRFEREQKRDKIRAVLWNVSIGGLYVMVIIQVFRGFIL
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