NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213873_10000001

Scaffold Ga0213873_10000001


Overview

Basic Information
Taxon OID3300021358 Open in IMG/M
Scaffold IDGa0213873_10000001 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1657979
Total Scaffold Genes1537 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)897 (58.36%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001519Metagenome / Metatranscriptome679Y
F001605Metagenome / Metatranscriptome664Y
F002324Metagenome571Y
F002548Metagenome / Metatranscriptome549Y
F004033Metagenome / Metatranscriptome456Y
F010196Metagenome / Metatranscriptome307Y
F020065Metagenome226Y
F021852Metagenome / Metatranscriptome217Y
F068101Metagenome / Metatranscriptome125Y
F068102Metagenome125Y
F069314Metagenome124Y
F081525Metagenome114Y
F084700Metagenome / Metatranscriptome112Y
F092677Metagenome107Y
F094358Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0213873_100000011015F068102GGTGGMRSMTSQGIATVAAAALLAFACAKPEPLTAAKAQEIIGDRSVQREPVYAEVPQKVWWTPQSPKDDYDEKALRTLHNLERAGLVVVGEAHPDEQSATYIAKVTAKGFPILGTAPSLRGPVYRGKICEKVYDGLRDFVRHPTEPTVGSAELIWHYDHATWLYPLFETKIDKPLRHPFASQIAFHWEKGDWKFSVMVKKTDAAPARAR
Ga0213873_100000011079F002324GGAGGMGEVRLFQICYEGDLTVEVSHVMRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRANLGADAKLLVASAQFTNTRDFLLVRHSLTPGADYAELHDALARLGTVVDLPFESTFVIQSDDRTDVHTLGAALGELCPDESLMVTGISHDWAYCNSGVSRMFVADEADVAQFRTF
Ga0213873_100000011118F084700N/AMSERVLDKLADILFATDEILDMLHVDEDRVPDDTSVVVEASVKHVYDQVNELMKKLTD
Ga0213873_100000011155F081525AGGMKIAAFLLALCLFAQSLPAACVNRFVSRTERHIQVVTLLTGRLTFQEAQLLADTIGKRQAPPLEWVDDHGKTIAKQFGDLKVVRPMPVGCDGKSSGVVLIAWFATAIVPSKKIMVKVDANTTIAFEQQ
Ga0213873_100000011321F021852N/AVAGFLFVSSRMTDFEDRIRRMAREAMVELGRDGVEIADVVEPPGADYCVISFTDENVRPIEIPKPLGAGESQELDEIRRALQYRFGT
Ga0213873_10000001147F010196AGGMGVVVPLTLFVLLEQHTVSQFLTIAATTFLSWGVADLLATVLSKPRLQNRSPQQALREDWERRSKE
Ga0213873_10000001166F094358GGAMIDLDGLQVAYLGVALAHWLDLETGDIIDLPLDADAPGDAARFRRIPTRTPESEEEDRRLFVDKLPPSPMRNELARAAPDANAFRAVLSEDRRIERSFFNFKNDQATRAIEVWLAEEGLE
Ga0213873_10000001211F068101AGGAGMPNGFPGGDALRDQAAALGQKVVENGPDAIFDEIENLLPEEWREHVRTFPLVAVTLGVGIGLWLGMRKSDEVLAAGTSLISAAAMANVSQVIDKMKGGG
Ga0213873_10000001400F004033AGAAGGMKKIVVGLALLLTAVVGMAADRPAAPEITPPSNGEEWLRLSSTEKLFWAIGYSAGYRDALDKIDVTAGPTSPCASLAARTERQTSTAGKITGFELVSGLERFYSDPANVMIPLDSAIRINLLQASGKDQTTIQELIDTARILGQQASARPPRPQ
Ga0213873_10000001408F020065N/AMKKSQIQEIKEGRAMRERTYTARVQPFGPKSSLPTKNAVALSTVPSSSKEKYNGGRE
Ga0213873_10000001442F001519GGAGMTLVNSLCAEISVFQGIGESTGIVVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPIDLWPKAKEPVTVHKHDWTVISSIPRTTRIGKKRRAASE
Ga0213873_10000001572F002548GGCGGMPKFEHESHTEDPSAFFERRRMRRVRMIVELTLNLISSDRTVSHREARCLVECARKAVLELFPGFERRYENVVRPHFDRVLQQRWPDEELRYTSPHEMVN
Ga0213873_10000001575F092677N/AMRRFAFACVVLVALRCGNDAAQPDHQAEWRTVLDQKKAAAAPGATNAHKQLYADSLRAFVVKHPNHSRAREVWIRMQLEFAGDLAAMGRYQDAIRLYSSILTHDPANDVARRGMALAADRLAVTHAKLLALAKGMSQHEVASLLGKPLPGWSVRRERGEATMEAWYYRTRDGGIAGVYFRDGKVLAAEESSDARVGRLGS
Ga0213873_10000001688F001605N/AMSETMPREPLAEAQTLAQLPLPILEEVIRQLRSTRNDIIRYGVWNIRNLSDDEFNKTDDRKLLGYFRQDLLETRFLSKGRRIDLIQLWNWFDAEMSGTEPLLVDGREVFLNIQDKDLEKVRKRIAEIQSFFPTLRGDDLEAFRRVKYKLRRTVMRLTYDLHHLFKRLEKYRKNIFMSSGAPRIDRDRIALEVVAEIPEPPMVEEHDDEP
Ga0213873_10000001917F069314N/AVSATAKRIEFLARAIVNRLEDRGLVEFRDAETGISVVAKALGDNFAAAELIEHEARQRLGDKASEADVENEMRRIAAQRNFIL
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