Scaffold Ga0213874_10009851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213874_10009851

Scaffold Ga0213874_10009851

Overview

Basic Information
Taxon OID	3300021377 Open in IMG/M
Scaffold ID	Ga0213874_10009851 Open in IMG/M
Source Dataset Name	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2377
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020613	Metagenome	223	Y
F025602	Metagenome / Metatranscriptome	201	Y
F089351	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213874_100098512	F089351	GGAG	MRARGWALLGSLVINLMLALVIVTVFSVSRPARAAESAQCPTHPAPTGRQSPAPPARSGQRYIVAVRMGWAMG
Ga0213874_100098514	F025602	AGGAGG	VRPFSSECPKCGHERLLTGYVPEELLELLRAGAEIEGYCISCDEHWAIATDERADLARALGQSK
Ga0213874_100098517	F020613	N/A	AACLRSSGMAEPFTLRERWFDVSALEFEAFLRDYPRPLDTRPPLSQKANYREWVDPSIGAWPGNAVGKSWKRGACLGYQIRLDLVLRVSAQERWNCAWCD

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