Basic Information | |
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Taxon OID | 3300021401 Open in IMG/M |
Scaffold ID | Ga0210393_10000450 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37092 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (74.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009971 | Metagenome / Metatranscriptome | 310 | Y |
F015645 | Metagenome / Metatranscriptome | 253 | Y |
F028339 | Metagenome / Metatranscriptome | 192 | Y |
F096129 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210393_1000045010 | F015645 | GGAG | MTVGETLTRAQQATVRAHLQTLRRSLAQARDVLMHFKDDRLDRDKLEPAARRADDLMDMFAGDMRDSTQGPVWVAEIQSGIEQVTNPKAAAALRDAQVDITALLDMIGPARQLGAAAAVSTGPAG |
Ga0210393_1000045014 | F028339 | AGGAG | VKWIVLACATVVAGCANFAPTDNRSFPGAGQPAVDERRESRALELAESDCVSQGKTVDAGRVEGQTVYDCVER |
Ga0210393_1000045016 | F096129 | AGGAGG | MTDPAPSRHSEQFRYYHDRAIAIRARLPVVVDDEAFIELYLLAAYYERLAEFVESSGSLACIED |
Ga0210393_100004505 | F009971 | GAGG | MHTFSLRCLLLAVPMGSVLAQTPALQMNVVYVCADGQSFKVFSCDNTTGACDYQNYKKGEAFQRGEALRVQLTALLPAKCHVQTPAEAQADPHRGEIPPAPSPFRARASVGSNGSGSAAAVNLQNGPGGFKVGDTVRVLSDGWQEAKVMQLHGSFYVVQLSNGITVSKQWPTEVRRLGKLTAEDHAAGQYDRGDRVQVLVNGKWMEGEIRGQNLNMYDIKVPGVDTGFGSDIVNTTPENIRVSSTAPPPAPAQRAAGQVPRPGLMSCAGKYEGRWEHVSGMGGMGVIFRSGHATGEALGSDFECFTGGGKVAFYKPGAPQPTYEFDINNDGTLQTPLGAIKKVGN |
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