NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210385_10000522

Scaffold Ga0210385_10000522


Overview

Basic Information
Taxon OID3300021402 Open in IMG/M
Scaffold IDGa0210385_10000522 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26958
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (83.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004073Metagenome / Metatranscriptome454Y
F096129Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0210385_1000052210F004073AGGAGGVQLKHSVAVGVLLSFLANMPTSAADSDLTGKWVGKFIGVQIEIPGQTDPFGYLNGESRAIQGPRFMENTLHIEFETQKQGLAVGLWNAGEFKQQFVCAQLTQTQWDCVDPGGRASVEIRSATEIKLCYLDNREGAQGAGCALLRRAAG
Ga0210385_1000052216F096129AGCAGGMMTYPASTASKHPEQSRHYRDLAIAIRDRLAMLEDDELYTELYLLAVHYERLAAFADSSGSLGSFNARVVSN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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