NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210397_10806966

Scaffold Ga0210397_10806966


Overview

Basic Information
Taxon OID3300021403 Open in IMG/M
Scaffold IDGa0210397_10806966 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062944Metagenome / Metatranscriptome130Y
F089221Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0210397_108069661F089221N/AMFLRHPSDRPSVVVDPAAFGVVAPQDGSFVGRAGPLGRERVMSALPLDPGPALLSPPTVVRDPGSAFLADPDGNLIGEAAVWVGRMLTARWTEDTRRF
Ga0210397_108069662F062944GGAGGVPLSRRFTPEHPPGESCSFGIDFSFIVPVGVSLASGSLAILTNTAAPADASADWTIGPVAVRGRALYAMLAGGVAGTDYQLKFTAVDTAGNSWPRTALVLCADT
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