NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193709_1016103

Scaffold Ga0193709_1016103


Overview

Basic Information
Taxon OID3300021411 Open in IMG/M
Scaffold IDGa0193709_1016103 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1837
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9821Long. (o)-107.0102Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004245Metagenome447Y
F093686Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0193709_10161032F093686GGAGGLNLRHGMLSISLADEKVDCALQQRQERKQEKEQPASKTAESKFQR
Ga0193709_10161034F004245N/AVFYDSNLSNSDRSADVRDDWAWRSDISAGNSLQLTRDLRMNLGADLRGEVWDRFGAFNTIGPGASAGLRYRFGLGRQAPWVLLEDRFGYDRFQDTAQSGYDNVLNFQAGIALSDRIALEGGYAFESFVAPNDFYDRQVHRGNARMVFDVTSSLQVTAGYTYREGDVISYAVPPRPDIARFSIEREDQDEFGQPLRTAYKLLGRTNAVSFSVAYQLMKYASVQLGYEYAITTHDPLQYENHLVQANIAVAY

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